Background and Metadata

Figure 1

Wikimedia

Assessing Read Quality

Figure 1

workflow

Figure 2

workflow_qc

Figure 3

good_quality

Figure 4

bad_quality

Trimming and Filtering

Variant Calling Workflow

Figure 1

workflow_align

Figure 2

sam_bam1

Figure 3

sam_bam2

Figure 4

workflow

Figure 5

IGV

Automating a Variant Calling Workflow